Plazas-Mayorca, M.D.; Zee, B.M.; Young, N.L.; Fingerman, I.M.; LeRoy, G.; Briggs, S.D.; Garcia B.A., One-pot shotgun quantitative mass spectrometry characterization of histones. Journal of Proteome Research, 2009, 8, 1), 67-74.
Archives
Publications
Archive for 2009
One-pot shotgun quantitative mass spectrometry characterization of histones
A mixed-integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed ETD tandem mass spectrometry
Dimaggio, P. A.; Young, N. L.; Baliban, R. C.; Garcia, B. A.; Floudas, C. A., A mixed-integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed ETD tandem mass spectrometry . Mol Cell Proteomics 2009, 8, 2527.43.
Protein quantification across hundreds of experimental conditions
Khan, Z.; Bloom, J.S.; Garcia, B.A.; Singh, M.; Krugylak, L., Protein quantification across hundreds of experimental conditions. PNAS, 2009, 106, (37),15544-8.
High-throughput characterization of combinatorial histone codes
Young, N. L.; Dimaggio, P. A.; Plazas-Mayorca, M. D.; Baliban, R. C.; Floudas, C. A.; Garcia, B. A., High-throughput characterization of combinatorial histone codes. Mol Cell Proteomics, 2009, 8, (10), 2266-84. (*High-lighted as a Faculty of 1000 Must read article, http://f1000biology.com/article/id/1164285/evaluation)
Proteome-wide prediction of acetylation substrates
Basu, A.; Rose, K.L.; Zhang, J.; Beavis, R.C.; Ueberheide, B.; Garcia, B.A.; Chait, B.T.; Zhao, Y.; Hunt, D.F.; Segal, E.; Allis, C.D.; Hake, S.B., Proteome-wide prediction of acetylation substrates. PNAS, 2009, 106, (33), 13785-90.
Heterochromatin protein 1 is extensively decorated with histone code-like post-translational modifications
Leroy, G.; Weston, J. T.; Zee, B. M.; Young, N. L.; Plazas-Mayorca, M. D.; Garcia, B. A., Heterochromatin protein 1 is extensively decorated with histone code-like post-translational modifications. Mol Cell Proteomics, 2009, 8, 2432-42.
Decoding the histone code by quantitative proteomics
Leroy, G.; Plazas-Mayorca, M. D.; Young, N. L.; Garcia, B. A., Decoding the histone code by quantitative proteomics. Mol Cell Proteomics, 8, (8), Supplement 1, S11, 2009.
Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells
Xie, W.; Song, C.; Young, N. L.; Sperling, A. S.; Xu, F.; Sridharan, R.; Conway, A. E.; Garcia, B. A.; Plath, K.; Clark, A. T.; Grunstein, M., Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Mol Cell 2009, 33, (4), 417-27.
Mass spectrometric analysis of histone variants and post-translational modifications
Garcia, B. A., Mass spectrometric analysis of histone variants and post-translational modifications. Front Biosci (Schol Ed) 2009, 1, 142-53.
Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance
El Gazzar, M.; Yoza, B. K.; Chen, X.; Garcia, B. A.; Young, N. L.; McCall, C. E., Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance. Mol Cell Biol 2009, 29, (7), 1959-71.