Publications

Archive for 2012

Origins and Formation of Histone Methylation across the Human Cell Cycle

Zee, B.M., Britton, L.M., Wolle, D., Haberman, D., Garcia, B.A. Origins and Formation of Histone Methylation across the Human Cell Cycle. Molecular and Cellular Biology, 2012, 32(13):2503-14

Analysis of histone posttranslational modification patterns by high resolution mass spectrometry

Lin, S. Garcia, B.A. Analysis of histone posttranslational modification patterns by high resolution mass spectrometry. Methods in Enzymology, 2012, 512:3-28.

PILOT_PROTEIN: Identification of Unmodified and Modified Proteins via High-Resolution Mass Spectrometry and Mixed-Integer Linear Optimization

Baliban, R.C.; Dimaggio, P. A.; Plazas-Mayorca, M.D.; Garcia, B. A., Floudas, C. A. PILOT_PROTEIN: Identification of Unmodified and Modified Proteins via High-Resolution Mass Spectrometry and Mixed-Integer Linear Optimization. J Proteome Res. 2012, 11(9):4615-29.

Smyd3 regulates cancer cell phenotypes and catalyzes histone H4 lysine 5 methylation

Van Aller GS, Reynoird N, Barbash O, Huddleston M, Liu S, Zmoos AF, McDevitt P, Sinnamon R, Le B, Mas G, Annan R, Sage J, Garcia BA, Tummino PJ, Gozani O, Kruger RG. Smyd3 regulates cancer cell phenotypes and catalyzes histone H4 lysine 5 methylation. Epigenetics. 2012, 1;7(4), 340-343.

Discovery of lysine post-translational modifications through mass spectrometric detection

Zee, B.M., Garcia, B.A. Discovery of lysine post-translational modifications through mass spectrometric detection. Essays in Biochemistry, 2012, 52:147-63.

ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression

Ratnakumar K, Duarte LF, Leroy G, Hasson D, Smeets D, Vardabasso C, Bönisch C, Zeng T, Xiang B, Zhang DY, Li H, Wang X, Hake SB, Schermelleh L, Garcia BA, Bernstein E. ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression. Genes Dev. 2012, 26(5):433-8.

Histone H3 Lysine 56 Methylation Regulates DNA Replication through Its Interaction with PCNA

Yu Y, Song C, Zhang Q, Dimaggio PA, Garcia BA, York A, Carey MF, Grunstein M. Histone H3 Lysine 56 Methylation Regulates DNA Replication through Its Interaction with PCNA. Mol Cell. 2012, 46(1):7-17.

Methylation of H4 lysines 5, 8 and 12 by yeast Set5 calibrates chromatin stress responses

Green, E.M., Mas, G., Young, N.L., Garcia, B.A., Gozani, O. Methylation of H4 lysines 5, 8 and 12 by yeast Set5 calibrates chromatin stress responses. Nat Struct Mol Biol. 2012, 19(3):361-3.

Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples

Baliban, R.C., Sakellari, D., Li, Z., DiMaggio, P.A., Garcia, B.A., Floudas, C.A. Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples. Journal of Clinical Periodontology, 2012, 3, 203-12.