Publications

Archive for 2017

Genomic and Proteomic Resolution of Heterochromatin and Its Restriction of Alternate Fate Genes

Genomic and Proteomic Resolution of Heterochromatin and Its Restriction of Alternate Fate Genes. Becker JS, McCarthy RL, Sidoli S, Donahue G, Kaeding KE, He Z, Lin S, Garcia BA, Zaret KS. Mol Cell. 2017 Dec 21;68(6):1023-1037.

TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling

TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling. Berson A, Sartoris A, Nativio R, Van Deerlin V, Toledo JB, Porta S, Liu S, Chung CY, Garcia BA, Lee VM, Trojanowski JQ, Johnson FB, Berger SL, Bonini NM. Curr Biol. 2017 Nov 9. pii: S0960-9822(17)31327-1.

GiaPronto: a one-click graph visualization software for proteomics datasets

GiaPronto: a one-click graph visualization software for proteomics datasets. Weiner AK, Sidoli S, Diskin SJ, Garcia B. Mol Cell Proteomics. 2018 Jul;17(7):1426-1431.

PKC epsilon is a Key Regulator of Mitochondrial Redox Homeostasis in Acute Myeloid Leukemia

PKC epsilon is a Key Regulator of Mitochondrial Redox Homeostasis in Acute Myeloid Leukemia. Di Marcantonio D, Martinez E, Sidoli S, Vadaketh J, Nieborowska-Skorska M, Gupta A, Meadows JM, Ferraro F, Masselli E, Challen GA, Milsom MD, Scholl C, Froehling S, Balachandran S, Skorski T, Garcia B, Mirandola P, Gobbi G, Garzon R, Vitale M, Sykes SM. Clin Cancer Res. 2018 Feb 1;24(3):608-618.

Assessment of quantification precision of histone post-translational modifications by using an ion trap and down to 50,000 cells as starting material

Assessment of quantification precision of histone post-translational modifications by using an ion trap and down to 50,000 cells as starting material. Guo Q, Sidoli S, Garcia BA, Zhao X. J Proteome Res. 2018 Jan 5;17(1):234-242.

Naked Mole Rat Cells Have a Stable Epigenome that Resists iPSC Reprogramming

Naked Mole Rat Cells Have a Stable Epigenome that Resists iPSC Reprogramming. Tan L, Ke Z, Tombline G, Macoretta N, Hayes K, Tian X, Lv R, Ablaeva J, Gilbert M, Bhanu NV, Yuan ZF, Garcia BA, Shi YG, Shi Y, Seluanov A, Gorbunova V. Stem Cell Reports. 2017 Nov 14;9(5):1721-1734

Characterization of histone acylations links chromatin modifications with metabolism

Characterization of histone acylations links chromatin modifications with metabolism. Simithy J, Sidoli S, Yuan ZF, Coradin M, Bhanu NV, Marchione DM, Klein BJ, Bazilevsky GA, McCullough CE, Magin RS, Kutateladze TG, Snyder NW, Marmorstein R, Garcia BA. Nat Commun. 2017 Oct 26;8(1):1141.

The nucleosomal surface is the main target of histone ADP-ribosylation in response to DNA damage

The nucleosomal surface is the main target of histone ADP-ribosylation in response to DNA damage. Karch KR, Langelier MF, Pascal JM, Garcia BA. Mol Biosyst. 2017 Nov 21;13(12):2660-2671.

Cytoplasmic chromatin triggers inflammation in senescence and cancer

Cytoplasmic chromatin triggers inflammation in senescence and cancer. Dou Z, Ghosh K, Vizioli MG, Zhu J, Sen P, Wangensteen KJ, Simithy J, Lan Y, Lin Y, Zhou Z, Capell BC, Xu C, Xu M, Kieckhaefer JE, Jiang T, Shoshkes-Carmel M, Tanim KMAA, Barber GN, Seykora JT, Millar SE, Kaestner KH, Garcia BA, Adams PD, Berger SL. Nature. 2017 Oct 19;550(7676):402-406.

Sites Contributing to TRPA1 Activation by the Anesthetic Propofol Identified by Photoaffinity Labeling

Sites Contributing to TRPA1 Activation by the Anesthetic Propofol Identified by Photoaffinity Labeling. Woll KA, Skinner KA, Gianti E, Bhanu NV, Garcia BA, Carnevale V, Eckenhoff RG, Gaudet R. Biophys J. 2017 Sep 19. pii: S0006-3495(17)30963-3.